CDS
| Accession Number | TCMCG017C25183 |
| gbkey | CDS |
| Protein Id | OMO72379.1 |
| Location | complement(join(7187..8017,8267..8417,9156..10987,11701..12213)) |
| GeneID | InterPro:IPR007855 |
| Organism | Corchorus olitorius |
| locus_tag | COLO4_27640 |
Protein
| Length | 1108aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA215141, BioSample:SAMN03160584 |
| db_source | AWUE01019654.1 |
| Definition | RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius] |
| Locus_tag | COLO4_27640 |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGGGCAAGACTATTCAAGTTTCTGGGTTCCTCTCTAACGTGACTGCAGAGAATGTTAAGACGTTTTTGGAGTCATATACAGGCCAAGGAACTGTTTATGCCCTTAAACTCAGGCAGCCAAAAAAGGGAGGTAGAGCATATGCTATTGTGCAATTTACCAGAACCACAGATGCTGAGCTAATCATAAAGTTGGCTAATCAAAGACTATACTATGGGAGTTCATATCTCAAGGCTCGAGAAATGGAGAGTGATATAGTGCCAAAGCCGAGAACCTTTTTGCATACCATGGAACATGTGAAAGTGCATTTTGGCTGTCAGGTCTCAAATGAAAAGATTTATGCTCTCTGGGAAGAGGTTGATTTTACTGTGAATTTTGGGATGGCGATGCGGAAATTGCAATTTCTACTTTCACATCATCCGGTAGAATACAAGCTTGAGCTTTCCTATGAGAACATATGGCAGATTGAGCTGCGCCGTCCACGCGATCGTACATCGAAGTATCTTCTCATTCAGTTATTTGGCTCTCCTCGGATATATGAGAAAGATGTCCGCCCCTCTGGAAATGTTTTTGATAGTCCTTTGTTTAACTATTTCATGAATGTACCTGATGATCAATGGGTAAGGACGACTGATTTCACTCGATCATGCTATATTGGGCAGTCTTCTGTATTGTGTTTGGAGCTTCCTCGTGACCTCCAACTTCCAAATTTTCGAGAGAACTTCGCATACTACAAGGAAAGTGAAGGCAGATTGGTTTTTGAAACTGGTTCTTCTTACTCCCATAATCTTAGTCTGGTTCCAGTTGTAGGCCCTCCACTGGGAGTTAAGTTGCCATTTGAAATCTTGTTTAAGGTTAATTGGTTGGTCCAAAATGGGTGCATCCCAGGACCAGCACTTGATGCTAATTTTTTCCGAATGGTTGATCCACATAGAATACAGAGAGACTATATAGAACATGCGCTTGAGAAGCTTTACTTTTTAAGAGAATGCTGCTATGAACCTTCAAAGTGGCTCCTTGAGCAGTACAGAAATTACATTGCATCTAGGAAAATCCTTAGATCACCTGCTATATCCTTAGATGATGGTTTGGTGTATGTAAGGAGGGTACAGATAACACCTTCGAGAGTGTATTTTGGTGGTCCTGAGGTTAATGTTTCAAATCGTGTGCTACGCCATTTTCCTAATGACATTGATAATTTTCTTCGCATTAGTTTTGTTGATGAGGAGCTGGAAAAGATCCATTCAACAGAATTGCTGACAAGGGGTAGGAGGACAGAAATTTATGGAAGGATTCTTTCTGCTCTTAAAAATGGCATAGTCATTGGTGAGAAGAGATTTGAATTTCTTGCCTTTTCATCAAGTCAATTACGTGAAAATTCAGCCTGGATGTTTGCTTCAAGAAACGGGCTCACTGCAGCAGGTATAAGGGGGTGGATGGGAGATTTTAGTAAAATAAAAAATGTGGCAAAATATGCTGCTAGACTGGGCCAATCTTTCAGTTCATCAACCGAAACTCTTACCGTTTCTAAGGATGAAATTGAAGTTATTCCTGATATAGAAGTTGAATGGGGAGGTATAAAATATGTCTTTTCTGATGGAATTGGAAAAATATCAGCTGAATTTGCCAAGAAGGTGGCCAAAAAATGTAACTTGCATGGTTGCACTCCATCTGCCTTTCAGATTAGGATTGGTGGATACAAAGGTGTTGTGGCTGTTGACCCCACTTCATCAAGGAAATTATCCCTTAGAAGGAGCATGTCCAAATATGAATCAGATAACACAAAATTGGATGTGTTGGCTTGGAGTAAGTATCAGCCTTGTTTTCTCAATCGCCAGTTGATCACTCTCTTATCTACTCTTGGAGTTCCAGACTGTGCCTTTGAGAAAAAACAAAAACAAGCAGTAGATCAACTAAATGCTATCCTAACAGATCCTTTAAAGGCTCAGGAGGCTCTAGAATTAATGTCTCCGGGAGAGAATACTACCGTTCTCAAGGAAATGCTCTTGTGTGGCTATGAGCCTAATGTTGAGCCATTTCTTTCCATGATGTTGCAAACCTTTCGGGCATCAAAGTTACTGGAGTTGCGGACTAAAACCAGGATATTTATTCAAGAGGGAAGGTCTATGATGGGATGTCTAGATGAAACTCGAACATTGAATTATGGTGAGGTGTTTGTGCAGTTTTCAGGTTCTAGATCGGAGCAACGTTATATTGTTCAGGGTAAGGTAGTTGTAGCAAAAAACCCCTGCTTGCACCCAGGCGATGTGCGAGTGTTAACGGCTGTCAATGTGCCTGATTTGTACCATATGGTAGATTGTGTTGTTTTTCCGCAGAAGGGATTCAGACCTCATCCAAATGAGTGTTCTGGAAGTGATCTGGATGGCGATATCTACTTTGTCTCTTGGGACCCTGAACTGATTCCATCAAAGCAAGTCCCTCCGATGGATTATTCTCCAGCTCCATCTACAACATTGGATCATGAAGTTACCATTGAGGAAGTTCAAGAGTATTTTACAAACTACATAGTCAACGACAGTTTAGGAATCATTGCAAATGCTCATACTGTTTTTGCTGATAGAGAATCTACCAAAGCAATGAGCAGTAATTGCATAGAGCTTGCAAAGCTGTTTTCAATTGCTGTTGATTTTCCAAAGACTGGAGTACCAGCTGAAATACCACAAGAACTGAGAGTCAAAGTGTATCCAGACTTCATGGAGAAGCCAGACAAGCCAACCTATACATCGTATAGTGTTATTGGAAAGCTTTTCCGAGAGGTGAAGGACCTTGCACCCACTGAATGCTCCATCAAGTCCTTCACTCGGGAAAGATTGAGGAGTGTTTATGATCATGACATGGAAGTTGATGGCTATGAAGATTACATTGATGATGCTTTCTATCACAAAAGTAATTATGATTACAAATTGGGGAACTTAATGGACTATTATGGAATCAAAACTGAGGCTGAAATACTCGGTGGGGGTATAATGAAAATGTCAAGATCTTTCACAAAGAAAAGAGATGCAGAAGCAATTTCTATGGCTGTGAGGTCCCTGAGAAAGGAAGCTAGGTCATGGTTTAAAGAAAAGGGAAGTGGGTTGGATTCTGAAACAGAAGATGTATATGCAAAAGCCTCAGCTTGGTACCATGTTACGTACCATCTAAGTTATTGGGGTCAGTACAATGAGGGAATGAATAGGGATCATTTTCTGAGCTTTCCTTGGTGTGTTTATGACAAGCTGATCCACATCAAGAAAGAAAAGGTGGCTAGAAGAGCTGCACGTGTATTAGATCTACAATCTGTTTTCGAGCGTGGATGGCATATTTGA |
| Protein: MGKTIQVSGFLSNVTAENVKTFLESYTGQGTVYALKLRQPKKGGRAYAIVQFTRTTDAELIIKLANQRLYYGSSYLKAREMESDIVPKPRTFLHTMEHVKVHFGCQVSNEKIYALWEEVDFTVNFGMAMRKLQFLLSHHPVEYKLELSYENIWQIELRRPRDRTSKYLLIQLFGSPRIYEKDVRPSGNVFDSPLFNYFMNVPDDQWVRTTDFTRSCYIGQSSVLCLELPRDLQLPNFRENFAYYKESEGRLVFETGSSYSHNLSLVPVVGPPLGVKLPFEILFKVNWLVQNGCIPGPALDANFFRMVDPHRIQRDYIEHALEKLYFLRECCYEPSKWLLEQYRNYIASRKILRSPAISLDDGLVYVRRVQITPSRVYFGGPEVNVSNRVLRHFPNDIDNFLRISFVDEELEKIHSTELLTRGRRTEIYGRILSALKNGIVIGEKRFEFLAFSSSQLRENSAWMFASRNGLTAAGIRGWMGDFSKIKNVAKYAARLGQSFSSSTETLTVSKDEIEVIPDIEVEWGGIKYVFSDGIGKISAEFAKKVAKKCNLHGCTPSAFQIRIGGYKGVVAVDPTSSRKLSLRRSMSKYESDNTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDCAFEKKQKQAVDQLNAILTDPLKAQEALELMSPGENTTVLKEMLLCGYEPNVEPFLSMMLQTFRASKLLELRTKTRIFIQEGRSMMGCLDETRTLNYGEVFVQFSGSRSEQRYIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLYHMVDCVVFPQKGFRPHPNECSGSDLDGDIYFVSWDPELIPSKQVPPMDYSPAPSTTLDHEVTIEEVQEYFTNYIVNDSLGIIANAHTVFADRESTKAMSSNCIELAKLFSIAVDFPKTGVPAEIPQELRVKVYPDFMEKPDKPTYTSYSVIGKLFREVKDLAPTECSIKSFTRERLRSVYDHDMEVDGYEDYIDDAFYHKSNYDYKLGNLMDYYGIKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFKEKGSGLDSETEDVYAKASAWYHVTYHLSYWGQYNEGMNRDHFLSFPWCVYDKLIHIKKEKVARRAARVLDLQSVFERGWHI |